{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Converting .pairs to .parquet"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Here is how a classical .pairs file looks like:"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<img src=\"pairs.png\" alt=\".pairs format\" title=\".pairs format\" width=\"400\"/>"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "For more details about .pairs file format please look at the [documentation](https://pairtools.readthedocs.io/en/latest/index.html)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "In order to convert .pairs to .parquet you need to run an easy cli command (which has similar parameters to pairtools functions). Here is an example with useful parameters:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "pairs_to_parquet csv-to-parquet -o test.parquet --nproc 4 --tmpdir /temp_directory --memory 35G test.pairs.gz"
   ]
  }
 ],
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  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.12.5"
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 "nbformat_minor": 2
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